OSDN -- Développer et télécharger des logiciels Open Source
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Description du projet

This software collection is for a DNA sequencing laboratory. It is used to design closure/finishing reactions following a shotgun sequencing experiment. It requires a draft assembly composed of contigs and scaffolds.

Système requise

Système d'exploitation: POSIX (Linux,BSD,Solaris etc..)

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Latest 5 files
Nom Taille Date Télécharger compter
fragUpload.pl 17.8 KB 2007-09-05 23:33 5
process.txt 5.8 KB 2007-07-23 02:20 5
importTraces.pl 40.1 KB 2007-07-23 02:19 1
uploadShreds.pl 15.6 KB 2007-07-23 02:14 13
tarun.pl 25.2 KB 2007-07-23 02:14 2
All Files
BCIS Scripts
BCIS PERL Scripts
fragUpload.pl17.8 KB2007-09-05 23:335
xml_merge.pl2.3 KB2007-07-14 04:354
splitTrace.pl3.5 KB2007-07-14 04:351
scaff2fasta.pl3.4 KB2007-07-14 04:352
modifyFrgDST.pl2.3 KB2007-07-14 04:350
modifyFrgClr.pl3.1 KB2007-07-14 04:350
mergeClr.pl1.7 KB2007-07-14 04:350
get_and_convert_traces_3.pl0.9 KB2007-07-14 04:350
get_and_convert_traces_2.pl1.4 KB2007-07-14 04:351
get_and_convert_traces_1.pl2.4 KB2007-07-14 04:350
getLucyClr.pl1.3 KB2007-07-14 04:350
frg2bambusMates.pl2.3 KB2007-07-14 04:352
fasta2base.pl1.8 KB2007-07-14 04:352
extractfromfastanames.pl2.0 KB2007-07-14 04:350
extractfromfastaname.pl1.7 KB2007-07-14 04:350
difference.pl2.0 KB2007-07-14 04:352
asm2mdi.pl1.8 KB2007-07-14 04:350
asm2clrs.pl1.6 KB2007-07-14 04:353
BCIS SQL scripts
get_physends_asm.sql0.2 KB2007-07-14 04:300
getShredIds.sql0.2 KB2007-07-14 04:302
getSequenceNames.sql0.1 KB2007-07-14 04:300
getSequenceCount.sql0.2 KB2007-07-14 04:300
delete_shreds.sql2.2 KB2007-07-14 04:300
BCIS AMOS Scripts
uploadAssembly.amos1.7 KB2007-07-14 04:250
trashSeqs.amos2.7 KB2007-07-14 04:250
rotateContig.amos1.9 KB2007-07-14 04:250
preCavalidate.amos1.0 KB2007-07-14 04:250
mergeAssemblies.amos2.3 KB2007-07-14 04:251
joinContigs.amos3.0 KB2007-07-14 04:251
insertVector.amos2.1 KB2007-07-14 04:250
downloadAssembly.amos2.5 KB2007-07-14 04:250
circularizeContig.amos1.9 KB2007-07-14 04:250
ckpAssembly.amos1.9 KB2007-07-14 04:250
cavalidate.amos1.6 KB2007-07-14 04:257
autoFinish.amos1.4 KB2007-07-14 04:252
addCoverageEnd.amos1.6 KB2007-07-14 04:250
addCoverageBegin.amos1.5 KB2007-07-14 04:250
FASTAcmp.amos1.5 KB2007-07-14 04:251
AMOScmp.amos1.9 KB2007-07-14 04:2519
Trace Importation
TraceImport PERL Scripts
process.txt5.8 KB2007-07-23 02:205
importTraces.pl40.1 KB2007-07-23 02:191
CA Tools
CA Tools PERL scripts
uploadShreds.pl15.6 KB2007-07-23 02:1413
tarun.pl25.2 KB2007-07-23 02:142
subtasm.pl21.1 KB2007-07-23 02:140
subfrag.pl27.0 KB2007-07-23 02:143
subcontig.pl5.5 KB2007-07-23 02:1420
seqUpload.pl36.7 KB2007-07-23 02:143
scaffinfo.pl3.3 KB2007-07-23 02:142
run_TA_notify.pl2.1 KB2007-07-23 02:143
run_TA.pl24.3 KB2007-07-23 02:145
run_CA.retired.pl0.3 KB2007-07-23 02:142
retrim.pl53.8 KB2007-07-23 02:140
restat.pl19.2 KB2007-07-23 02:130
resizeScaff.pl3.1 KB2007-07-23 02:130
remapFeatures.pl3.5 KB2007-07-23 02:130
reclip.pl30.6 KB2007-07-23 02:130
recall.pl54.4 KB2007-07-23 02:130
qc_combine.pl11.0 KB2007-07-23 02:130
qcCompare.pl10.2 KB2007-07-23 02:131
pullx.pl94.3 KB2007-07-23 02:131
pullfrag.pl75.3 KB2007-07-23 02:130
pullShredIds.pl7.9 KB2007-07-23 02:130
pullCollection.pl20.7 KB2007-07-23 02:130
promoteUnitigs.pl50.1 KB2007-07-23 02:130
listRepeats.pl5.9 KB2007-07-23 02:130
libraryUpload.pl9.4 KB2007-07-23 02:130
insert2mates.pl12.8 KB2007-07-23 02:130
get_quality_class.pl16.4 KB2007-07-23 02:131
genfrag.pl16.2 KB2007-07-23 02:1354
genericTraceImport.pl69.6 KB2007-07-23 02:130
frg2ta.pl9.6 KB2007-07-23 02:131
frg2bcp.pl2.9 KB2007-07-23 02:131
find-nonuniquehole.pl6.3 KB2007-07-23 02:133
featUpload.pl21.1 KB2007-07-23 02:130
extract-tasm-comments.pl2.2 KB2007-07-23 02:1321
editfrag.pl14.7 KB2007-07-23 02:130
createUpload.pl3.4 KB2007-07-23 02:134
cgwqc.pl36.1 KB2007-07-23 02:130
carun.pl19.5 KB2007-07-23 02:134
caqc.pl59.6 KB2007-07-23 02:138
call_PROGS.pl11.9 KB2007-07-23 02:131
call_OVL.pl6.5 KB2007-07-23 02:133
call_CA.pl14.9 KB2007-07-23 02:130
ca2ta.pl68.6 KB2007-07-23 02:131
ca2scaff.pl4.7 KB2007-07-23 02:132
arun.pl43.8 KB2007-07-23 02:130
aprep.pl14.5 KB2007-07-23 02:131
aloader.pl21.6 KB2007-07-23 02:1314
aeexec.pl22.1 KB2007-07-23 02:130
aeCasperScaffold.pl3.9 KB2007-07-23 02:131
Shred_Contigs.pl6.7 KB2007-07-23 02:134
Generate_NonShallow_Contigs.pl9.3 KB2007-07-23 02:131
FASTA_to_frg_file.pl4.1 KB2007-07-23 02:121
ARUN_scriptRunning.pl1.7 KB2007-07-23 02:121
ARUN_runStats.pl4.7 KB2007-07-23 02:120